A Microarray Based Approach for the Identification of Common Foodborne Viruses

Table 1.: Genomic Sequence Alignment of Selected HAV Strains Around the Forward Primer

Strain^a	Sequence^b
M14707	TGATTAGATTGAATGATGAGAAATGGACAGAAATGAAGGATGACA
M59808	TGATTAGATTGAATGATGAGAAATGGACAGAAATGAAGGATGACA
M59809	TGATTAGATTGAATGATGAGAAATGGACAGAAATGAAGGATGACA
M59810	TGATTAGATTGAATGATGAGAAATGGACAGAAATGAAGGATGACA
M16632	TGATTAGATTGAATGATGAGAAATGGACAGAAATGAAGGATGACA
X75214	TGGTCAGATTGAATGATGAGAAATGGACAGAAATGAAAGATGATA
X75215	TGGTCAGATTGAATGATGAGAAATGGACAGAAATGAAAGATGATA
X83302	TGGTCAGATTGAATGATGAGAAATGGACAGAAATGAAAGATGATA
K02990	TGATCAGATTGAATGATGAGAAATGGACAGAAATGAAGGATGATA
AB020564	TGGTCAGATTGAATGATGAGAAATGGACAGAAATGAAAGATGATA
AB020565	TGGTTAGATTGAATGATGAGAAATGGACAGAAATGAAGGATGACA
AB020566	TGGTCAGATTGAATGATGAGAAATGGACAGAAATGAAGGATGACA
AB020567	TGAGTAGATTGAATGATGAGAAATGGACAGAAATGAAGGATGATA
AB020568	TGGTTAGATTGAATGATGAGAAATGGACAGAAATGAAAGATGATA
AB020569	TGATTAGATTGAATGATGAGAAATGGACAGAAATGAAGGATGATA
forward primer	GAATGATGAGAAATGGACAGAAATG

^a Strains are identified by their GenBank accession number.

^b HAV sequence alignment is presented as the positive (sense) genomic strand in 5’ to 3’ orientation. The primer sequence and nucleotide identity is based on the genomic sequence and nucleotide numbering of HM175 strain 18f (M59808) at nucleotide positions 3399 to 3423.