A Microarray Based Approach for the Identification of Common Foodborne Viruses

Table 2.: Genomic Sequence Alignment of Selected HAV Strains around the Reverse Primer

Strain^a	Sequence^b
M14707	AAAGTCAATTCCGAAACTGGTTTCAGCTGAGGTACATTCTTG
M59808	AAAGTCAATTCCGAAACTGGTTTCAGCTGAGGTACATTCTTG
M59809	AAAGTCAATTCCGAAACTGGTTTCAGCTGAGGTACATTCTTG
M59810	AAAGTCAATTCCGAAACTGGTTTCAGCTGAGGTACATTCTTG
M16632	AAAGTCAATTCCGAAACTGGTTTCAGCTGAGGTACATTCTTG
X75214	AAAGTCAATTCTGAAACGGGCTTCAGTTGGGGCACATTTTTA
X75215	AAAGTCAATTCTGAAACGGGCTTCAGTTGGGGCACATTTTTA
X83302	AAAGTCAATTCCGAAACTGGTTTCAGCTGAGGTACATTCTTG
K02990	AAAGTCAATTCTGAAACTGGCTTCAGTTGAGGCACATTTTTA
AB020564	AAGGTCAATTCTGAAACTGGCTTCAGTTGAGGCACATTTTTA
AB020565	AAAGTCAATTCTGAAACTGGCTTCAGTTGAGGCACATTTTTA
AB020566	AAAGTCAATTCTGAAACTGGCTTCAGTTGAGGCACATTTTTA
AB020567	AAAGTCAATTCTGAAACTGGCTTCAGTTGAGGCACATTTTTA
AB020568	AAAGTCAATTCTGAAACTGGCTTCAGTTGAGGCACATTTTTA
AB020569	AAAGTCAATTCTGAAACTGGCTTCAGTTGAGGCACATTTTTA
reverse primer	CCGAAACTGGTTTCAGCTGAGG

^a HAV strains are identified by their GenBank accession number.

^b HAV sequence alignment is presented as the reverse complement (antisense) of the genomic strand in 5’ to 3’ orientation. The primer sequence and nucleotide identity is based on the genomic sequence and nucleotide numbering of HM175 strain 18f (M59808) at nucleotide positions 7105 to 7084.