A Microarray Based Approach for the Identification of Common Foodborne Viruses

Table 3.: Genomic Sequence Alignment of Selected CV Strains Around the Forward Primer

Strain^a	Sequence^b
X05690	TCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGA
AF311939	TCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGA
AF114384	TCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGA
AF081485	TCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGA
AF085363	TCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGA
AY186748	TCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGA
AY186746	TCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGA
M16560	TCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGA
M88483	TCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGA
AF231764	TCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGA
U57056	TCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGA
D00627	TCCTCCGGCCCCTGAATGCGGCTAATCCCAACTGCGGA
AF114383	TCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGA
X67706	TCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGA
D00538	TCCTCCGGCCCCTGAATGCGGCTAATCCTAACCACGGA
D90457	TCCTCCGGCCCCTGAATGCGGCTAATCCTAACCATGGA
AF177911	TCCTCCGGCCCCTGAATGCGGCTAATCCTAACTGCGGA
forward primer	CCCCTGAATGCGGCTAATCC

^a CV strains are identified by their GenBank accession number and includes both A and B serotype strains (refer to Fig. (2) for serotype identification).

^b CV sequence alignment is presented as the positive (sense) genomic strand in 5’ to 3’ orientation. The primer sequence and nucleotide identity is based on the genomic sequence and nucleotide numbering of CVB1 (M16560) at nucleotide positions 454 to 473.