A Microarray Based Approach for the Identification of Common Foodborne Viruses

Table 4.: Genomic Sequence Alignment of Selected CV Strains around the Reverse Primer

Strain^a	Sequence^b
X05690	CATTTCTGACAATGCATCTGGGAACTTCCACCACCACCCC
AF311939	CATCTCTGACAGCGCATCTGGGAACTTCCACCACCACCCC
AF114384	CATATTGGACAGCGCATCAGGAAACTTCCACCACCACCCT
AF081485	CATGTCTGATAGTGCGTCGGGAAACTTCCACCACCAACCA
AF085363	CATGTCTGATAGTGCGTCGGGAAACTTCCACCACCAACCA
AY186748	CATTTGCGATAGCGCATCTGGCAGTTTCCACCACCACCCA
AY186746	CATTTGCGATAGCGCATCTGGCAGTTTCCACCACCACCCA
M16560	CATTTGTGAAAGTGCATCTGGTAACTTCCACCACCAACCT
M88483	TAAGTTCGACAAAGCATCGGGCAGCTTCCACCACCATCCT
AF231764	TAAGTTCGACAAAGCATCGGGCAGCTTCCACCACCATCCT
U57056	TAAGTTCGACAAAGCATCAGGCAGCTTCCACCACCATCCT
D00627	CATATCACTAAGCGCTTCTGGGAACTTCCACCACCACCCC
AF177911	TACTTCTGTCAAAACATCAGGGAATTTCCAATACCATCCC
reverse primer	TCDGGNARYTTCCACCACCA

^a CV strains are identified by their GenBank accession number.

^b CV sequence alignment is presented as the reverse complement (antisense) of the genomic strand in 5’ to 3’ orientation. The primer sequence and nucleotide identity is based on the genomic sequence and nucleotide numbering of CVB1 (M16560) at nucleotide positions 1199 to 1180. The primer is degenerate where D equals A, G, or T; N equals A, G, C, or T; R equals A or G; and Y equals C or T, respectively.