The Rainbow Prim Algorithm for Selecting Putative Orthologous Protein Sequences

Troisi, Anna Rosa; Aloisio, Giovanni; Rossi, Ivan; Fariselli, Piero; Casadio, Fariselli

The Rainbow Prim Algorithm for Selecting Putative Orthologous Protein Sequences

Anna Rosa Troisi¹, Giovanni Aloisio¹, Ivan Rossi², Piero Fariselli², Fariselli Casadio^{*, 2}

¹ University of Salento & SPACI Consortium, via per Monteroni 73100 Lecce, Italy

² Biocomputing Group - Department of Biology, University of Bologna, via Irnerio 42 40126 Bologna, Italy

Article Information

Identifiers and Pagination:

Year: 2008
Volume: 2
First Page: 60
Last Page: 63
Publisher ID: TOBIOIJ-2-60
DOI: 10.2174/1875036200802010060

Article History:

Received Date: 10/07/2008
Revision Received Date: 29/07/2008
Acceptance Date: 08/08/2008
Electronic publication date: 16/09/2008
Collection year: 2008

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© 2008 Troisi et al.

open-access license: This is an open access article distributed under the terms of the Creative Commons Attribution 4.0 International Public License (CC-BY 4.0), a copy of which is available at: https://creativecommons.org/licenses/by/4.0/legalcode. This license permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

^* Address correspondence to this author at the Biocomputing Group - Department of Biology, University of Bologna, via Irnerio 42 40126 Bologna, Italy; E-mail: casadio@biocomp.unibo.it

We present a selection method designed for eliminating species redundancy in clusters of putative orthologous sequences, to be applied as a post-processing procedure to pre-clustered data obtained from other methods. The algorithm can always zero-out the cluster redundancy while preserving the number of species of the original cluster

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RESEARCH ARTICLE

The Rainbow Prim Algorithm for Selecting Putative Orthologous Protein Sequences

Article Information

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