| Category 1 — Intensity measurements | |
|---|---|
| Nuc/Cell Intensity | Intensity from nuclear region / intensity from cytoplasmic region |
| Cell/Bckg Intensity | Intensity from cytoplasmic region / background intensity |
| Nuc Intensity | Intensity from nuclear region per unit area |
| Cell Intensity | Cytoplasmic intensity per unit area |
| Background Intensity | Average intensity in the local background |
| Light Flux | Total intensity in per nuclear region / cytoplasmic intensity per unit area |
| Intensity (N+C) | Intensity in whole cell per unit area |
| IxA (Nuc) | Total nuclear intensity per cell |
| IxA (Cell) | Total cytoplasmic intensity per cell |
| IxA (N+C) | Total intensity from whole cell per cell |
| Organelle Inclusion/Cell Intensity | Ratio of the organelle intensity inclusions to cell intensity |
| Organelle Inclusion/Bckg | Intensity of organelle objects / local background intensity |
| Organelle Intensity | Intensity of pixels within inclusions per unit area |
| OrgIxA | Total organelle intensity per cell |
| Category 2 — Measurements of intensity distribution | |
| Nuc Intensity CV | Coefficient of variation for intensity in the nuclear region |
| Intensity Spreading | Cellular intensity distribution |
| Cell Intensity CV | Coefficient of variation of cell intensity |
| Category 3 —Morphological measurements | |
| Cell Area | Cell area |
| Nuc/Cell Area | Nuclear area / cell area |
| Cell Gyration Radius | Average radius of cells |
| Cell Elongation Mean | Ratio of the short axis to long axis of the cell |
| Cell 1/(Form Factor) | Cell roundness index |
| Organelle Count | Number of identified organelle objects |
| Organelle Spacing | Distance between organelle objects |
| Organelle Neighbor Count | Number of neighboring organelle |
| Organelle Mean Area | Mean area of identified organelle objects |
| Organelle 1/(Form Factor) | Roundness index of organelle |
| Organelle Elongation | Mean ratio of the short axis of the organelle to the long axis |
| Organelle Distance to Nuc | Distance from the center of gravity of organelle to center of gravity of nucleus |
| Organelle Total Area | Total area of organelle |
| Cell Count | Number of cells |