Table 4: Average Values of the Indices J,R, and FM and of the Probability pJ, pR, and pFM that a Values Higher than the One that is Observed Might be Obtained by Chance. Standard Deviations of the Mean are Reported in Parentheses Method
| Method |
J |
R |
FM |
pJ |
pR |
pFM |
| baker |
0.80(0.02) |
0.82(0.02) |
0.88(0.01) |
39(4) |
35(4) |
37(4) |
| chop |
0.66(0.03) |
0.70(0.03) |
0.79(0.02) |
66(5) |
63(5) |
63(5) |
| chophomo |
0.66(0.03) |
0.69(0.03) |
0.79(0.02) |
67(5) |
65(5) |
64(5) |
| distill |
0.70(0.02) |
0.73(0.02) |
0.82(0.01) |
58(4) |
56(4) |
55(4) |
| domfold |
0.76(0.02) |
0.77(0.02) |
0.86(0.01) |
49(5) |
48(5) |
46(5) |
| domssea |
0.76(0.03) |
0.78(0.02) |
0.86(0.02) |
50(5) |
48(5) |
48(5) |
| dps |
0.74(0.03) |
0.77(0.02) |
0.84(0.02) |
55(5) |
52(5) |
52(5) |
| foldpro |
0.82(0.02) |
0.84(0.02) |
0.90(0.01) |
34(4) |
32(4) |
31(4) |
| hhpred1 |
0.77(0.02) |
0.78(0.02) |
0.86(0.01) |
46(4) |
45(4) |
42(4) |
| hhpred3 |
0.76(0.02) |
0.78(0.02) |
0.86(0.01) |
46(4) |
45(4) |
43(4) |
| maopus |
0.80(0.02) |
0.83(0.02) |
0.88(0.01) |
42(5) |
36(5) |
39(5) |
| metadp |
0.76(0.03) |
0.77(0.03) |
0.86(0.02) |
49(5) |
48(5) |
46(5) |
| NNput |
0.71(0.02) |
0.73(0.02) |
0.83(0.01) |
56(4) |
55(4) |
53(4) |
| robetta |
0.79(0.02) |
0.81(0.02) |
0.87(0.01) |
40(4) |
36(4) |
37(4) |