Table 3: Statistically significant pathways as identified by the DIANA-mirPath multiple miRNA algorithm. Pathways were found using gene targets of responding miRNAs

Cell-Type Pathway KEGG Pathway Code # Genes Gene Targets p-Value
A549 Ribosome hsa03010 4 RPL35 RPL3L RPS5 RPS6 0.002
Small cell lung cancer hsa05222 8 AKT3 CCNE1 LAMA5 AMB3 NFKB2 PTK2 RELA RXRB 0.028
gamma-Hexachlorocyclohexane degradation hsa00361 9 ACP5 ACP6 ACPP ALPI ALPL ALPPL2 DHRS2 PON1 PON2 0.035
TGF-beta signaling pathway hsa04350 9 ACVR2B COMP ID3 MAPK3 NOG TGFB1 THBS4 TNF ZFYVE9 0.037
HFL-1 Cell Communication hsa01430 24 CHAD COL11A2 COL1A1 COL6A1 COL6A2 COMP ITGB4 KRT14 KRT15 KRT17 KRT23 KRT37 KRT39 KRT5 KRT71 KRT76 KRT82 KRT9 LAMA1 LAMA5 LAMB3 LAMB4 NES TNC 0.003
Phosphatidylinositol signaling system hsa04070 14 CALML3 CDIPT DGKA INPP5E ITPKA ITPR3 PI4KB PIB5PA PIK3CA PIK3CD PIP5K1B PLCG2 PLCZ1 PRKCG 0.011
Lysine degradation hsa00310 9 DLST ECHS1 EHMT2 HADHA NSD1 OGDH OGDHL PLOD1 PLOD3 0.013
Inositol phosphate metabolism hsa00562 10 INPP5E ITPKA MIOX PI4KB PIB5PA PIK3CA PIK3CD PIP5K1B PLCG2 PLCZ1 0.022
Glycan structures - biosynthesis 1 hsa01030 4 ALG12 B4GALT3 CHPF ST3GAL2 0.023
Focal adhesion hsa04510 28 ACTN1 BAD BCAR1 CHAD COL11A2 COL1A1 COL6A1 COL6A2 COMP FLNA ILK ITGA2B ITGB4 LAMA1 LAMA5 LAMB3 LAMB4 MYL2 MYL9 MYLK2 MYLPF PIK3CA PIK3CD PPP1CA PRKCG RAC3 TLN1 TNC 0.031
Leukocyte transendothelial mi-gration hsa04670 18 ACTN1 BCAR1 CD99 CLDN15 CLDN4 CYBA MAPK12 MAPK13 MMP9 MYL2 MYL9 MYLPF NCF1 PIK3CA PIK3CD PLCG2 PRKCG RAPGEF3 0.033
Ribosome hsa03010 2 RPL3L RPS11 0.035
ECM-receptor interaction hsa04512 14 AGRN CHAD COL11A2 COL1A1 COL6A1 COL6A2 ITGA2B ITGB4 LAMA1 LAMA5 LAMB3 LAMB4 SV2A TNC 0.041
THP-1 Keratan sulfate biosynthesis hsa00533 4 ST3GAL3 FUT8 B4GALT2 B4GALT3 0.000
Hematopoietic cell lineage hsa04640 7 CD33 CD1A CD38 CD34 IL4R ITGA5 HLA-DRB5 0.024
PPAR signaling pathway hsa03320 6 APOC3 RXRB APOA5 APOA2 FABP3 ACOX3 0.039