Table 2: Identification of not aligned inserts in human GIs in comparison to 38 other species with different times of speciation.
Specie |
Accession |
Number of GIs with indels |
Number of GIs containing lncRNAs overlapping indels |
Number of lncRNAs overlapping indels |
Number of unique lncRNA insertion events after speciation |
Estimated Divergence Time from H. sapiens (MYA) |
Chimpanzee |
PanTro5 |
2 |
1 |
1 |
1 |
6.65 |
Bonobo |
PanPan1 |
5 |
1 |
1 |
0 |
6.65 |
Gorilla |
GorGor5 |
5 |
1 |
1 |
0 |
9.06 |
Orangutan |
PonAbe2 |
7 |
3 |
5 |
4 |
15.76 |
Green Monkey |
ChlSab2 |
38 |
10 |
21 |
16 |
29.44 |
Crab-eating macaque |
MacFas5 |
39 |
10 |
21 |
0 |
29.44 |
Rhesus |
RheMac8 |
46 |
13 |
24 |
3 |
29.44 |
Baboon |
PapAnu2 |
60 |
15 |
26 |
2 |
29.44 |
Marmoset |
CalJac3 |
91 |
37 |
174 |
148 |
43.2 |
Squirrel monkey |
SaiBol1 |
125 |
59 |
253 |
79 |
43.2 |
Tarsier |
TarSyr2 |
148 |
72 |
314 |
61 |
67.1 |
Mouse lemur |
MicMur2 |
151 |
73 |
326 |
12 |
74.0 |
Bushbaby |
OtoGar3 |
157 |
75 |
357 |
31 |
74.0 |
Malayan flying lemur |
GalVar1 |
158 |
75 |
361 |
4 |
76.0 |
Mouse |
Mm10 |
163 |
82 |
374 |
13 |
90.0 |
Rat |
Rn6 |
163 |
82 |
374 |
0 |
90.0 |
Naked mole-rat |
HetGla2 |
163 |
82 |
374 |
0 |
90.0 |
Rabbit |
OryCun2 |
164 |
82 |
380 |
6 |
90.0 |
Pig |
SusScr3 |
165 |
82 |
380 |
0 |
96.0 |
Cow |
BosTau8 |
166 |
84 |
381 |
1 |
96.0 |
Bison |
BisBis1 |
182 |
94 |
420 |
39 |
96.0 |
Sheep |
OviAri3 |
182 |
94 |
420 |
0 |
96.0 |
Dolphin |
TurTru2 |
185 |
95 |
430 |
10 |
96.0 |
Alpaca |
VicPac2 |
185 |
95 |
434 |
4 |
96.0 |
Horse |
EquCab2 |
185 |
96 |
438 |
4 |
96.0 |
Dog |
CanFam3 |
197 |
108 |
514 |
76 |
96.0 |
Ferret |
MusFur1 |
197 |
108 |
518 |
4 |
96.0 |
Cat |
FelCat8 |
199 |
108 |
520 |
2 |
96.0 |
Chinese pangolin |
ManPen1 |
228 |
124 |
638 |
118 |
96.0 |
Manatee |
TriMan1 |
232 |
131 |
671 |
33 |
105.0 |
Wallaby |
MacEug2 |
341 |
218 |
1,199 |
528 |
159.0 |
Opossum |
MonDom5 |
343 |
220 |
1,211 |
12 |
159.0 |
Platypus |
OrnAna2 |
678 |
445 |
2,387 |
1,176 |
177.0 |
Chicken |
GalGal5 |
765 |
509 |
2,752 |
365 |
312.0 |
Golden eagle |
AquChr2 |
840 |
567 |
2,979 |
227 |
312.0 |
Brown kiwi |
AptMan1 |
1,108 |
758 |
3,975 |
996 |
312.0 |
X. tropicalis |
XenTro7 |
2,136 |
1,497 |
7,666 |
3,691 |
352.0 |
Zebrafish |
DanRer10 |
4,076 |
3,072 |
16,024 |
8,358 |
435.0 |