| Cis-Regulatory Element | Sequence | Function |
|---|---|---|
| AAGAA-motif | GAAAGAA | Unknown |
| A-box | CCGTCC | Cis-acting regulatory element |
| ABRE | TACGTG | Cis-acting element involved in the abscisic acid responsiveness |
| ACE | AAAACGTTTA | Cis-acting element involved in light responsiveness |
| ARE | TGGTTT | Cis-acting regulatory element essential for the anaerobic induction |
| Box 4 | ATTAAT | Part of a conserved DNA module involved in light responsiveness |
| CAAT-box | CAAT | Common cis-acting element in promoter and enhancer regions |
| CAT-box | GCCACT | Cis-acting regulatory element related to meristem expression |
| CCGTCC-box | CCGTCC | Cis-acting regulatory element related to meristem specific activation |
| CGTCA-motif | CGTCA | Cis-acting regulatory element involved in the MeJA-responsiveness |
| Circadian | CAANNNNATC | Cis-acting regulatory element involved in circadian control |
| GAG-motif | GGAGATG | Part of a light responsive element |
| GA-motif | AAAGATGA | Part of a light responsive element |
| G-box | TACGTG | Cis-acting regulatory element involved in light responsiveness |
| G-Box | CACGTA | Cis-acting regulatory element involved in light responsiveness |
| HSE | AAAAAATTTC | Cis-acting element involved in heat stress responsiveness |
| MBS | TAACTG | MYB binding site involved in drought-inducibility |
| O2-site | GATGATATGG | Cis-acting regulatory element involved in zein metabolism regulation |
| SKn-1-motif | GTCAT | Cis-acting regulatory element required for endosperm expression |
| Sp1 | CC(G/A)CCC | Light responsive element |
| TATA-box | TATAAA | Core promoter element around -30 of transcription start |
| TC-rich repeats | ATTTTCTTCA | Cis-acting element involved in defense and stress responsiveness |
| TCT-motif | TCTTAC | Part of a light responsive element |
| TGACG-motif | TGACG | Cis-acting regulatory element involved in the MeJA-responsiveness |