Table 1: Percentage of the top 10 scored minor groove decoys with an RMSD less than 2.0 Å and higher than 4.0 Å among the four docking algorithms and associated scoring functions.
| PDB code |
Percentage of decoys with RMSD <2.0 Å |
Percentage of decoys with RMSD >4.0 Å |
| ASP |
ChemScore |
GoldScore |
Autodock |
ASP |
ChemScore |
GoldScore |
Autodock |
| 1d63 |
0 |
10 |
40 |
70 |
90 |
70 |
30 |
30 |
| 1eel |
20 |
10 |
10 |
0 |
80 |
60 |
60 |
50 |
| 2b0k |
10 |
0 |
20 |
100 |
90 |
80 |
70 |
0 |
| 2b3e |
10 |
30 |
20 |
0 |
80 |
60 |
70 |
100 |
| 2dbe |
10 |
0 |
10 |
100 |
80 |
70 |
80 |
0 |
| 2f8w |
0 |
0 |
10 |
0 |
100 |
100 |
90 |
100 |
| 2gvr |
0 |
0 |
10 |
30 |
90 |
100 |
90 |
70 |
| 3oie |
0 |
0 |
10 |
70 |
90 |
100 |
70 |
30 |
| 3u05 |
20 |
10 |
10 |
100 |
60 |
60 |
60 |
0 |
| 3u08 |
10 |
10 |
20 |
100 |
80 |
80 |
70 |
0 |
| 4z4b |
0 |
0 |
0 |
0 |
100 |
100 |
100 |
100 |
| 109d |
20 |
10 |
20 |
100 |
80 |
80 |
70 |
0 |
| 360d |
0 |
10 |
10 |
70 |
100 |
90 |
60 |
0 |
| 459d |
0 |
0 |
10 |
0 |
100 |
100 |
60 |
100 |
| Mean |
6.43 |
6.43 |
14.29 |
52.86 |
87.14 |
82.14 |
70.00 |
41.43 |