Table 2: Percentage of top 10 scored intercalated decoys with an RMSD less than 2.0 Å and higher than 4.0 Å among the four docking algorithms and their associated scoring functions.

PDB code	Percentage of decoys with RMSD <2.0 Å				Percentage of decoys with RMSD >4.0 Å
	ASP	ChemScore	GoldScore	Autodock	ASP	ChemScore	GoldScore	Autodock
1l1h	10	0	20	50	40	100	20	40
2gb9	10	0	10	0	60	100	70	90
3ce5	0	0	0	0	30	80	50	100
3em2	0	0	10	30	50	100	40	50
3eqw	0	0	10	0	100	100	30	50
3eru	0	0	10	0	80	100	40	60
3es0	0	0	0	10	90	100	90	50
3et8	0	0	0	0	100	100	80	40
3eui	0	0	10	0	70	100	60	90
3eum	0	0	20	0	60	100	30	90
3nyp	10	0	0	0	80	70	30	50
3nz7	0	0	20	10	50	100	20	70
3qsc	0	0	0	0	100	100	100	100
3qsf	0	0	0	0	100	100	100	100
Mean	2.14	0.00	7.86	7.14	72.14	96.43	54.29	70.00