| Strain Identification no. |
Identification Based on Comparison with Reference Sequence |
% Similarity to Reference Sequence |
Site of Nucleotide Polymorphisms (bp Position: Reference Sequence → Isolate Sequence) |
100% Similarity to Another GenBank Sequences Rather Than Reference Sequences (13 Novel Sequence GenBank Accession no.) |
| 04-303-0576 |
N. aobensis |
99.67 |
137 G→A |
novel sequence1 (FJ172101) |
| 01-320-2714 |
N. arthritidis |
99.0 |
132 C→T, 240 G→A, 251 C→T, 341 C→G, 566 A→G, 588 G→T |
novel sequence1 (FJ172102) |
| 02-071-3627 |
N. asteroides |
99.0 |
133-135 TTC→ACA, 148-150 GAG→TGT |
novel sequence1 (FJ172103) |
| 00-194-3516 |
N. brasiliensis |
99.84 |
203 T→C |
Z36935 |
| 03-273-2825 |
N. brasiliensis |
99.67 |
203 T→C, 328 G→A |
AY245543 |
| 99-167-2395 |
N. brasiliensis |
99.67 |
203 T→C, 328 G→A |
AY245543 |
| 00-159-1584 |
N. cyriacigeorgica |
99.84 |
576 G→A |
novel sequence1 (FJ172112) |
| 04-181-3939 |
N. cyriacigeorgica |
99.84 |
576 G→A |
| 05-111-2308 |
N. cyriacigeorgica |
99.84 |
576 G→A |
| 01-109-2248 |
N. farcinica |
99.84 |
67 A→A/G2
|
novel sequence1 (FJ172117) |
| 05-053-4454 |
N. nova |
99.84 |
86 C→ C/T2
|
novel sequence1 (FJ172126) |
| 02-352-3316 |
N. nova |
99.84 |
136 G→A/G2
|
novel sequence1 (FJ172120) |
| 00-130-2170 |
N. nova |
99.84 |
260 A→A/G2
|
novel sequence1 (FJ172121) |
| 04-110-3287 |
N. nova |
99.67 |
86 C→C/T2, 136 G→A/G2
|
novel sequence1 (FJ172125) |
| 00-056-3529 |
N. nova |
99.67 |
86 C→T, 136 G→A |
AF430030 |
| 01-067-1349 |
N. nova |
99.67 |
86 C→T, 136 G→A |
| 01-097-0996 |
N. nova |
99.67 |
86 C→T, 136 G→A |
| 02-199-2723 |
N. nova |
99.67 |
86 C→T, 136 G→A |
| 00-025-0538 |
N. nova |
99.67 |
135 G→T, 148 T→G |
AF430032 |
| 00-314-1789 |
N. nova |
99.67 |
135 G→T, 148 T→G |
| 04-150-0614 |
N. nova |
99.67 |
135 G→T, 148 T→G |
| 01-066-1903 |
N. nova |
99.51 |
86 C→T, 136 G→A, 578 T→G |
novel sequence1 (FJ172122) |
| 02-021-0419 |
N. nova |
99.51 |
135 G→T, 148 T→G, 328 A→G |
novel sequence1 (FJ172119) |
| 01-114-2816 |
N. otitidiscaviarum |
99.85 |
133 A→G |
novel sequence1 (FJ172127) |
| ATCC BAQ-278 |
N. paucivorans |
99.67 |
33 C-ins3, 37 G-ins3
|
AF179865 |
| 03-141-3073 |
N. paucivorans |
99.67 |
33 C-ins3, 37 G-ins3
|
| 03-185-3304 |
N. paucivorans |
99.67 |
33 C-ins3, 37 G-ins3
|
| 03-240-2758 |
N. paucivorans |
99.67 |
33 C-ins3, 37 G-ins3
|
| 05-200-1797 |
N. paucivorans |
99.67 |
33 C-ins3, 37 G-ins3
|
| 97-114-0609 |
N. paucivorans |
99.67 |
33 C-ins3, 37 G-ins3
|
| 97-16298 |
N. paucivorans |
99.67 |
33 C-ins3, 37 G-ins3
|
| 03-310-2776 |
N. transvalensis |
99.67 |
402, 403 AG→CA |
novel sequence1 (FJ172131) |
1 Sequences of isolates without a match with GenBank sequences are novel sequences.
2 At the specified bp position, both nucleotides were present due to different multiple copies of the 16S rRNA gene.
3 Refers to insertion of the specified base.