Table 2: Intra-Subtype Heterogeneity of STAT Consensus Sequences

HIV-LTR Subtype Putative STAT binding sequence No. of Sequences/Total %
A TTTCCAGGGGAG 24/39 61.5
B TTTCCAGG_GAG 35/54 64.8
C GTTCCAG__GAG 46/75 61.3
D TTTCCAG_GGAG 21/40 52.5
E (CRF01-AE) TTTCCAGGGGAG 29/30 96.6
F TTTCCAGAGGGC 5/9 55.5
G TTTCC__GGGAA 1/28 3.5
G” (CRF02-AG) TTTCC_GGGGAG 14/19 73.6