Amplicon | Location* | Reference nucleotide (GFPm) |
Variant nucleotide (EGFP) | Total Depth | Variant Frequency |
---|---|---|---|---|---|
>Rec1-EGFP | 21 | A | G | 7182 | 37% |
>Rec1-EGFP | 30 | T | C | 7093 | 37% |
>Rec1-EGFP | 33 | C | G | 7086 | 37% |
>Rec1-EGFP | 39 | C | G | 7040 | 37% |
>Rec1-EGFP | 48 | C | G | 6797 | 35% |
>Rec1-EGFP | 51 | G | C | 6731 | 34% |
>Rec1-EGFP | 54 | A | G | 6716 | 34% |
>Rec1-EGFP | 60 | T | C | 6683 | 34% |
>Rec1-EGFP | 66 | T | C | 6315 | 31% |
>Rec1-EGFP | 117 | A | C | 6437 | 41% |
>Rec1-EGFP | 123 | A | C | 6425 | 41% |
>Rec1-EGFP | 129 | C | G | 6416 | 39% |
>Rec1-EGFP | 138 | A | G | 6403 | 39% |
>Rec1-EGFP | 153 | T | C | 6343 | 38% |
>Rec1-EGFP | 165 | A | C | 6300 | 36% |
>Rec2-EGFP | 289 | C | T | 15531 | 20% |
>Rec3-EGFP | 456 | C | T | 15566 | 29% |
>Rec3-EGFP | 474 | A | G | 14345 | 37% |
>Rec3-EGFP | 480 | T | C | 14178 | 39% |
>Rec3-EGFP | 492 | C | G | 13736 | 43% |
>Rec3-EGFP | 505 | A | C | 13035 | 45% |
>Rec3-EGFP | 507 | A | C | 13023 | 45% |
>Rec3-EGFP | 514 | A | G | 12684 | 39% |
>Rec3-EGFP | 607 | T | A | 8032 | 37% |
>Rec3-EGFP | 608 | C | G | 8029 | 37% |
>Rec3-EGFP | 618 | T | C | 8407 | 36% |
>Rec3-EGFP | 633 | T | C | 8606 | 35% |
>Rec3-EGFP | 641 | A | C | 8598 | 36% |
>Rec3-EGFP | 642 | A | G | 8598 | 36% |
>Rec3-EGFP | 646 | A | C | 8711 | 35% |
>Rec3-EGFP | 648 | A | C | 8706 | 35% |
>Rec3-EGFP | 651 | C | T | 8698 | 35% |
>Rec3-EGFP | 672 | T | C | 8616 | 100% |
>Rec3-EGFP | 681 | T | C | 8601 | 100% |
>Rec3-EGFP | 684 | T | C | 8591 | 100% |
>Rec3-EGFP | 693 | A | T | 8643 | 100% |
>Rec3-EGFP | 695 | A | T | 8648 | 100% |
>Rec3-EGFP | 696 | T | C | 8646 | 100% |
* The locations of mutations are determined according to EGFP sequence. Mutations in the first variable region (21bp-165bp) are shown in regular. The C289T mutation is highlighted in bold and underlined. Mutations in the second variable region (456bp-651bp) are marked in italic. Mutations in the third variable region (672bp-696bp) are underlined. |