Table 5: Multiple sequence amino acids alignments. The alignments was done by using Clustal W2 sequence alignment method through MEGA X software. isolates 1,3 and 4 were showed an identical amino acids similarity with isolates from IRAN, JAPAN, GERMANY, USA and ZAMBIA with Gen Bank accession number of GU130546.1, LC185075.1, NC_025892, CAP-m9-USA-AY628233 and NC_025896 respectively.
Isolates
|
58 ' 60 ' ' ' ' | ' ' ' ' 70 ' ' ' ' | ' ' 80 |
germenync025892
|
Y |
L |
D |
G |
S |
V |
K |
N |
K |
R |
T |
Q |
I |
F |
P |
V |
E |
D |
P |
K |
D |
cap m9usa628233
|
. |
. |
F |
. |
. |
. |
. |
. |
. |
I |
. |
. |
. |
. |
. |
Y |
. |
. |
. |
. |
. |
jpan lc185075.1
|
. |
. |
. |
S |
. |
. |
N |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
iran 130546.1
|
L |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
R |
. |
. |
. |
. |
. |
. |
. |
. |
. |
zambianc 025896
|
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
V |
. |
. |
. |
. |
. |
. |
. |
. |
isolate1
|
* |
* |
* |
* |
* |
* |
* |
* |
* |
* |
* |
* |
* |
* |
. |
. |
. |
. |
. |
. |
. |
isolate3
|
* |
* |
L |
* |
* |
* |
* |
* |
* |
* |
* |
* |
* |
* |
. |
. |
. |
. |
. |
. |
. |
isolate4 |
* |
C |
* |
* |
* |
* |
* |
* |
* |
* |
* |
* |
* |
* |
. |
. |
. |
. |
. |
. |
. |