Straina
|
Sequenceb
|
X05690 |
CATTTCTGACAATGCATCTGGGAACTTCCACCACCACCCC |
AF311939 |
CATCTCTGACAGCGCATCTGGGAACTTCCACCACCACCCC |
AF114384 |
CATATTGGACAGCGCATCAGGAAACTTCCACCACCACCCT |
AF081485 |
CATGTCTGATAGTGCGTCGGGAAACTTCCACCACCAACCA |
AF085363 |
CATGTCTGATAGTGCGTCGGGAAACTTCCACCACCAACCA |
AY186748 |
CATTTGCGATAGCGCATCTGGCAGTTTCCACCACCACCCA |
AY186746 |
CATTTGCGATAGCGCATCTGGCAGTTTCCACCACCACCCA |
M16560 |
CATTTGTGAAAGTGCATCTGGTAACTTCCACCACCAACCT |
M88483 |
TAAGTTCGACAAAGCATCGGGCAGCTTCCACCACCATCCT |
AF231764 |
TAAGTTCGACAAAGCATCGGGCAGCTTCCACCACCATCCT |
U57056 |
TAAGTTCGACAAAGCATCAGGCAGCTTCCACCACCATCCT |
D00627 |
CATATCACTAAGCGCTTCTGGGAACTTCCACCACCACCCC |
AF177911 |
TACTTCTGTCAAAACATCAGGGAATTTCCAATACCATCCC |
reverse primer |
TCDGGNARYTTCCACCACCA |
a CV strains are identified by their GenBank accession number.
b CV sequence alignment is presented as the reverse complement (antisense) of the genomic strand in 5’ to 3’ orientation. The primer sequence and nucleotide identity is based on the genomic sequence and nucleotide numbering of CVB1 (M16560) at nucleotide positions 1199 to 1180. The primer is degenerate where D equals A, G, or T; N equals A, G, C, or T; R equals A or G; and Y equals C or T, respectively.